[Submission form]
[Description]
[Disclaimer]
Specify gene name or keyword
and organism
Homo sapiens
Mus musculus
Danio rerio
Rattus norvegicus
Gallus gallus
Anopheles gambiae
Fugu rubripes
Drosophila melanogaster
Pan troglodytes
Apis mellifera
Tetraodon nigroviridis
Canis familiaris
Caenorhabditis elegans
or
paste your DNA sequences
here in
multiple FASTA
format (max. 100 kb per sequence)
>rat EXAMPLE SEQUENCE AACAAACAACTACTCAATTCACTAATGTGAATGAGAAGTACCAGGTTGGTTAAGGCAGGC AATCGCTTGTCTTCACCTCCACTGGAGGAAAGAGGCCCCTTTATTTGCTTCCTTCCGCTT GCAAGTCCCACACCCAGCCCTCTCACTCCCCAAAGACTCAGCATAGCTACTGAGAGACAG CTGACTTGAGACCGAGCCTGCCCAGAAGCACAACCTTGGGCACATCCTGTAACTCCCCTT CCTGGTGCATCTATATAGAAACAGAATGCGAAGGCTTATCCCTCTTTATCTTCCTTTCAA CTTTACCAAAGAAAGTCATTATnnnnnnnnnnnnnnnnnnnnnTCCCAGTGAGGCTAGTC TGTGCTCTCAATGGGGGTCTCAAAACGAGACCTTTCCCTCCACACTCAGGCACCTTCATG GCGCCCCTATCATTAGGCATAATGTGTGCCAATGTTAAAGAAACTAAACATATGTGGCTT AGTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTTCTCTAGTCTTGACTGGTCTGG >human EXAMPLE SEQUNCE TTGTTTGTTGTTGTATGAATGGGAAGTGCCAGATAAAAGGAGCAATTGCTAATCTTCACC nnnnnnnnAGTCCAGAGAGAAAGGATCACTTCATTTACCCTGCTTCTCTTCTATTTCCAC ACCAATCCCTCCCCATTCACCACGGGGGTCAAGGAGTCTACCAGAGACAGCTAAGTCAGA ACAGAGTTGACTGCCTAGATGTGTGATTTTAGGCATGTCAGTTAATTTTCCTGTCTCTTG TTCCTACACAGAATTAGAGTCTATATCACTCTTTATCTTCCTTTTACTTTTGCCAAAGGA AGGCACTAAAAACATGCTGAGGAATATCTTGCCAGCATTTACAACTGCCCTTGAAGAGAG AATATGTGTTCTCAACACAGAAAGTTAGAAATAGGGTTCTTCCTACTACATTCACGCATT ATCAAGATAGCATTATCATTAGGCACAATGTCTTCAAATGTTAAAGAAAATAAACATAGG
or
select the file containing sequences
:
Search parameters
70 %
75 %
80 %
85 %
90 %
threshold for PWMs
0 bp
5 bp
10 bp
15 bp
length of flanks to calculate homology.
10 %
50 %
75 %
threshold for homology.
Aligner:
CONREAL
LAGAN
MAVID
BLASTZ
TFBS dataset:
JASPAR vertebrates
Transfac v.8.2 vertebrates
